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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… — ‘What are they doing? How do they interact?’” said senior author Francis Martin, a Research Director Emeritus at the … Auer, a research engineer at INRAE and one of the first authors of this work.  To compare these trophic guilds, this … person at the Walnut Creek Marriott the week of September 30 – October 4, 2024.  … The U.S. Department of Energy Joint …
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Natural Prodcast Episode 7: Ben Shen
… genome, the genome predicts they often can produce around 30 – more than 30 compounds. So, this was a complete surprise. So total, … different people have different numbers, but in general, an authoritative number for total number of natural products of …
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The Expanding Universe of Methane Metabolisms in Archaea
… available metagenome data provided by the other study co-authors, and reconstructed from these 10 … the oldest metabolisms, with the first traces possibly at ~3.5 Gy (billion years),” Borrel and Gribaldo said in an … to Korarchaeota Drs. Luke McKay and William Inskeep are co-authors on the Borrel et al. study described above, and also …
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JGI Announces 2023 Community Science Program Awardees
… to the proposers of the 19 proposals selected for the 2023 Community Science Program call of the U.S. Department of …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… publicly available for the research community,” says lead author Serina Robinson, a postdoctoral fellow at the ETH …
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Natural Prodcast Episode 10: A Primer on Genome Mining
Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed in finding your … is Challis et al, Chemistry and Biology, 2000, 211-224, 7:3 And so, you can then make predictions about NRPS’s that …
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JGI Hosts GPU Hackathon in May
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A Collaboration to Improve Plant Genome Annotations Across Species
Manager Sarah Sharman recently interviewed study first author Avinash Sreedasyam, a HudsonAlpha senior scientist, …
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Honey Bee Gut Microbiota Divvy Up Dinner
… these bacterial groups. But why the strain variability? The authors think the reason may be that … enzymes themselves. One other finding that interested the authors was that an evolutionary analysis of  … often lack the ability to break down hemicellulose. The authors think this might have to do with the differences in …
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JGI Scientists Pen Genome Watch Articles
… a model eukaryote. The wide array of topics comes from the authors’ interests, says Woyke. Their themes just need to … should be hot off the press. She tells prospective authors, “’Once you find a paper that you really like or are … about, take that topic and run with it — write about it.” Authors then float their ideas by Du Toit, sending her a …
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