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Events
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Simon Roux
… ecogenomics. For this role, Dr. Roux can rely on more than 10 years of expertise in the fields of virus ecology and … in the global microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum Information about an …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… Los Alamos National Lab researchers investigated Chromosome 16, which contains about 3% of the human genome. They wanted … chromosomes. These sequences account for approximately 12% of the total human genome, which itself was finally … of human chromosome 19 . Nature. 428, 529–535 (2004). doi:10.1038/nature02399 Schmutz, J., Martin, J., Terry, A. et …
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Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park
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JGI Portals
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Microbiome Data Science Team
… of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of … from the human gut microbiome. Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and … Reveal Thousands of Small, Novel Genes. Cell 178(5):1245-1259 Nayfach S, et al, (2019) New insights from …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
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A Collaboration to Improve Plant Genome Annotations Across Species
… targets for plant improvement. Surprisingly, about 16 to 56 percent of plant genes are poorly characterized, … plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, mostly related to … Avinash: In the initial planning phase, there were about 10 groups that came together to standardize the experimental …
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Products
… vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs 5-10kb in size Single gene … transcriptome or de novo assembly), DGE, alignment files 91/126 Metabolomics Polar metabolite analysis Relative … metabolites and unidentified features in spectra. 167/214 Metabolomics Non-polar metabolite analysis Relative …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… the JGI DNA Synthesis Science Program, which started in 2012, and what they’ve discovered through their … collaboration has been incredibly productive; more than 10 papers, including two Nature Plants publications, in five …
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John Vogel
… he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development … Brachypodium. Genetics, 223 (2), art. no. iyac146 DOI: 10.1093/genetics/iyac146 Gordon, et. al. 2020 Gradual … and metabolic responses. Proc. Natl. Acad. Sci. 116 (52) 27124-27132 Sasse, et. al.J. 2019 Multilab EcoFAB study shows …
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Toward More Efficient Artificial Photosynthesis
… Office of Science User Facility (contract no. DE-AC02-05CH11231) with T.J.E. as grantee. J.-C.B. acknowledges the … of Bordeaux Initiative of Excellence (IDEX Bordeaux; (ANR)-10-IDEX-03-02). T.E.M. and R.M. were supported by the …
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