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XA21-mediated resistance to Xanthomonas oryzae pv. oryzae is dose dependent
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Refining the Process of Identifying Algae Biotechnology Candidates
… involving researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … stresses, and its transcriptome to learn more about which genes expression patterns. The analysis led to the … Sustainable Energy, LLC, for the U.S. Department of Energy (DOE) under Contract No. DE-AC36-08GO28308. The work …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. … University in 2005, where he studied RNA editing and cancer genetics. Dr. Blow carried out postdoctoral work at LBNL, … in human and other vertebrate genomes. When he joined the JGI, he worked as a project scientist and then as a research …
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Virus-Microbe Interactions of Mud Island Mangroves
… his dissertation. Some of his research was conducted at the JGI through the DOE Office of Science Graduate Student Research (SCGSR) … to pursue part of their thesis research at one of the DOE national laboratories or national user facilities. Baker …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … isolating individual bacterial cells and amplifying their genetic material, thus bypassing the need to culture these microbes in the lab. After joining the JGI, he formed the Microscale Applications group to operate …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
… HudsonAlpha Institute for Biotechnology. Phytozome is the Plant Comparative Genomics portal of the Department of …
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Accelerating Metagenomics Discoveries with Deep Learning
… rather than single cells or isolated strains, is easy to generate, but difficult to assemble and interpret. The … a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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Extreme Scale De Novo Metagenome Assembly
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Omega: an Overlap-graph de novo Assembler for Metagenomics
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An Automated Tool for Assessing Virus Data Quality
… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … perform functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps … Biotechnology , a team from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Tina Clarke
… (JBEI) and in 2017 joined the Joint Genome Institute (JGI). Tina serves in an HR advisory role to Division/Area … Analyst, May 2015 –  present Joint Genome Institute (JGI) HR Partner, June 2017 – present Berkeley National … Era of Networks (Sybase Acquired Company), Pacheco, CA HR Generalist, 1999 – 2000 TriNet VCO, San Leandro, CA HR …
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DAS Tool for Genome Reconstruction from Metagenomes
… genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity Program (ETOP) , … functions in processes ranging from nutrient cycling to plant health and growth. Developing a scalable computational … and characterizing entire microbial genomes from sequences generated from environmental samples. The work aligns with …
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