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Draft genome sequences of three ruminant-associated Eubacteriales: Eubacterium ruminantium ATCC 17233T, Eubacterium uniforme ATCC 35992T, and Lacrimispora xylanisolvens DSM 3808T
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Three pairs of fungal Trametes strains isolated from distinct geographic origins show conserved genomic features and adaptive response to plant biomass
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Extracting the Secrets of Secondary Metabolites
… further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not essential for growth … survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and … The work conducted by the US Department of Energy Joint Genome …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the model … of plants.  Pangenomes encompass a plant’s genetic diversity beyond a single reference genome, which is key to …
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Ian Blaby
… Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain engineering and … development/data analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … JGI-supported project studying the world’s rivers and their microbial communities. He’s focusing on the Arkansas River … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a … years where he was a driving force behind the development of numerous genomic resources that fostered the widespread adoption of Brachypodium distachyon as an experimental model for …
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … a secondary metabolites portal within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … from environmental samples — to identify over 27,000 microbial genes. These genes were identified based on their …
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JGI-KBase Panel at SACNAS
… Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is … from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision The vision of the U.S. Department of Energy (DOE) Joint …
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A User-Centered Approach to Accessing JGI Data
… (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a common set of metadata. For Steve Wilson, JGI’s Systems … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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