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The Power of One, Amplified
… single cell genomics by collecting nearly 500 single cells from a single low diversity hot spring sediment sample. … JGI’s Microscale Applications group . Cells were randomly sorted, whole genome amplified, then sequenced and … to isolate sequencing, i.e. when the targeted cells cannot be cultivated in the lab. What makes this particular …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… or without light. The relatively small size of its genome also simplifies metabolic modeling and pathway optimization for enhanced lipid production. Also notable, researchers found it is missing 33 genes thought … Auxenochlorella could be an ideal chassis for producing not just high-value lipids, but  also designer chemicals and …
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DAP-seq Drives Robust Mapping of Gene Regulation
… scale of data enabled by these approaches creates a vast resource offering researchers the ability to chart regulatory … applications. “We worked with 10 species ranging from grasses to broccoli and trees like poplar, spanning … “A lot of these technologies were designed for samples from humans or mice,” said Sharon Greenblum, a co-first …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… to identify over 27,000 microbial genes. The data from that study is now used across California State … education as part of a course-based undergraduate resource experience. Hear from CSU San Marcos Professor Matt Escobar and UC Davis …
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Jeremy Schmutz
… working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he constructed … and co-led the team that finished the DOE human chromosomes 5, 16, and 19. Following the completion of the Human … strategies for de novo sequencing of eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the …
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JGI@25: Building a Better Bean
… 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges. While a hill of … the common bean’s nutritional value, providing anywhere from 10-30% of daily protein requirements. It is also an …
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Tracing the Evolution of Shiitake Mushrooms
… Lentinula   The Science Shiitake mushrooms get their name from the same place they often source their nutrients — the shii tree, a Japanese relative … A  new analysis takes a  genomic look at Lentinula samples from around the world. By complete sequencing of 24 new …
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Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1T), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus
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Genome evolution in the allotetraploid frog Xenopus laevis
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The Genome of the Western Clawed Frog Xenopus tropicalis
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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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