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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … alga genome) and  MycoCosm (for the fungus genome) to aid analysis. Many of the results were unexpected. For example, … DA, FL, and FD (for bioinformatics) from a DOE grant No 112442 to Pacific Northwest National Laboratory; and by a …
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Viruses Reprogram Cells into Different Virocells
… from The Ohio State University and the University of Michigan studying how virus infections cause significant … viruses outnumber surface microbes 10 to 1, and 20% to 40% of the microbes are infected at any given time. … was done by the JGI, and proteomics and metabolomics analysis and microscopy at EMSL. The team infected the …
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JGI-KBase Panel at SACNAS
Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific … students (and their mentors) how to begin establishing a professional presence through getting credit for any scientific contribution they make, whether as part of a course or internship, and before ever publishing a …
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JGI Launches Latest Strategic Plan
For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one … launching of a Secondary Metabolites research group (pages 47-49). “Our hope is to circulate this document widely within …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
… worked to replace yeast’s native chromosomes with synthetic versions. This project has turned out to be an international …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … Francis Martin will be a keynote speaker at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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Forming Scientific Connections and Building Community
The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … Project: “ Development of a multiplex genomic integration system for the selection of genes essential for specialized …
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Introducing New Members of the JGI User Executive Committee
… serving on the UEC – go here to view the full roster of members. Each of the researchers had their own reasons for wishing to … aims to help overcome common user bottlenecks in access, analysis and sharing of JGI-generated data. She is also …
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2025 NeLLi Symposium
Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the … to space restraints. Poster Sizes: The poster boards are 4’x8′. Please be mindful in bringing posters that are at … Ivanova , Functional Annotation Lead Steven Ahrendt , Biosystems Data Science … Brian Hedlund , University of Nevada, …
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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute … how these changes affect the dynamics and functioning of ecosystems. She leads a recently approved CSP New Investigator … improving bioinformatics tools that can help with dataset analysis, as well as how they can be shared with and used by …
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Marcel Huntemann
Marcel is in charge of several production pipelines (gene calling, functional … and methylomics) that run on microbial genomes and metagenomes. He also works on automating intra-department …
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Help from Citrus’ Bitter, Hardier Cousin
The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that … to 2016, in Florida alone this disease caused an estimated $4 billion in losses. Currently, ninety percent of Florida … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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