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2025 NeLLi Symposium
…   Registration has closed   Registration fees: Regular attendees  (LBNL and … Immediately following the NeLLi Symposium, join us for a 1.5–day jamboree on November 6–7 focused on improving … genomics will work together to develop recommendations for cultivating new bacteria and archaea revealed by a …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… Though visible to the naked eye, microscopy reveals unexpected complexity At first glance, the slightly … National Laboratory (Berkeley Lab) and the Laboratory for Research in Complex Systems (LRC) in Menlo Park, Calif. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data … virus sequences vary widely. In a previous effort, an international consortium recommended specific … functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps researchers to …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden … Australia but is increasingly farmed in other countries for essential oil production. The recent assembly of two … also thrive in areas that receive a lot of rain.  Previous analysis of the E. grandis reference genome, an …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 2022 marks the JGI’s 25th anniversary. Over the last year, we’ve been revisiting a … a chemical and biological engineer at the University of California Santa Barbara. So plants don’t break down without a …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The … be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these hosts are microbes like … This work was supported by the U.S. Department of Energy, Office of …
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Triggering Morel Fruiting
… A collaborative team led by Hao Tan from the Sichuan Academy of … Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In the following guest piece, JGI … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Accepted proposals emphasize JGI interests in algae and secondary … 80 full proposals, resulting from 95 letters of intent. For the first time, 63 percent of the accepted proposals … (KBase) , a free, open source data science platform that allows users to explore data and share …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring multiple omics methods to examine … bioproducts. This study offers a template — integrative analysis of multiple omics data from various environments — … This work conducted by the U.S. Department of Energy Joint Genome Institute …
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Gut Fungi: Unexpected Source of Novel Chemicals
… Fungi from herbivore poop make surprisingly complex compounds — an energetically expensive feat thought to be too costly for them. The Science Anaerobic fungi, which die in the … This research project was supported by a grant from Santa Barbara Cottage Hospital and the University of California, Santa Barbara and a gift from the Gordon and Betty …
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JGI User Executive Committee Expands
… Six new members have been elected to the User Executive Committee (UEC) … Laboratory (Berkeley Lab). They are: Ivan Baxter of the Danforth Center, Sundy Maurice of the University of Oslo, Aaron … improving bioinformatics tools that can help with dataset analysis, as well as how they can be shared with and used by …
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River microbiomes from around the world: Kelly Wrighton
… Kelly Wrighton and her group at Colorado State University in Fort Collins have a massive …
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