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Codon bias, nucleotide selection, and genome size predict in situ bacterial growth rate and transcription in rewetted soil
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Dan Rokhsar
… and evolutionary analysis of over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics … and Development after his research interests shifted from condensed matter physics to computational biology, … and understanding and ultimately assisting the adaptation of plants to changing environments. …
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Team Science Reveals Important Protein in Poplar
… CFN to determine where the protein was expressed in plant cells. JBEI also contributed to lignin and flavonoid … and cell wall structure in the poplar plants with help from scientists at the NSLS-II.  These findings lay the … (BNL). The Fe deprivation RNA-seq (proposal:  10.46936/10.25585/60001386 ) was conducted by the U.S. Department …
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A Complex Confection Decoded: Sugarcane Reference Genome
… to future environmental conditions. Additionally, insights from the genome could help scale sustainable sugarcane … and took more than a decade because there were pieces from multiple boxes, including some duplicates, to sort through in order to form a single cohesive image. An approximately nine billion base …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… tools and techniques applied to samples collected from acidic iron-oxide microbial mats in Yellowstone … , the team used metagenome assemblies, transcriptomes and single amplified genomes from samples collected from several locations to … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. The work was supported by Pacific Northwest National …
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JGI Scientists Pen Genome Watch Articles
… leads the  Microbial Program at the JGI, received a message from Andrea Du Toit, senior editor for  Nature Reviews … this role. “We work with leaders in environmental genomics from around the globe through a collaborative network of … move toward characterizing the human microbiome  by its genomes and metagenome , rather than just by 16S ribosomal …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in large data sets, their work may be akin to finding a single snowflake on a colored-in page of that book. … data sets of RNA sequences (metatranscriptomes) generated from diverse environmental samples around the world, … datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into …
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Access to Rock Star Scientists
… UC Merced JGI Mentors : Tanja Woyke & Jessica Jarett, Single Cells Group “My experience at JGI has exposed me to the …
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Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds
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Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication
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Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites
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Genome Sequence of Oceanicola sp. Strain MCTG156(1a), Isolated from a Scottish Coastal Phytoplankton Net Sample
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