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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the same place they often source their nutrients — the shii tree, a Japanese … 1456588 to D.H. and DEB-1442113 to A.R., the Department of Energy award 0000238431 to D.H., the GENOBIOREF …
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Katherine Louie
… efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … techniques, the platform delivers rich metabolite profiles from diverse biological and environmental samples in … A, et al. Anaerobic gut fungi are an untapped reservoir of natural products. Proc Natl Acad Sci U S A. 2021;118. …
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Mike Sneddon
… Department at the Joint Genome Institute. His team of engineers and scientists builds and operates the data and … science.  Dr. Sneddon is an accomplished leader in data, software, compute, and AI for large-scale genomics and lab … earned his PhD in Computational Biology and Bioinformatics from Yale University. …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea flourish … in learning how these microbes have learned to adapt from marine to hypersaline conditions by studying the … (project 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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Georg Rath
… Before joining the JGI, he has been working on the boundary of life science and computational science with notable stops at NERSC, IMBA (Institute of Molecular Biotechnology, Vienna) and the High Field MRI Centre in Vienna, where he first stumbled from software development into building productive …
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Mateus Fiamenghi
… research is focusing on the identification and analysis of Mobile Genetic Elements from Metagenomic Data.  Mateus’s GitHub …
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Alabama A&M Interns Access An Abundance of Knowledge
… mentors Yi Zhai and John Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant … is Dr. Yi Zhai, and I’m currently working on the effect of plant root exudates in the rhizosphere and microbiome. … regulate the production of root exudates, which overall influences the health and composition of the root microbiome …
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Jeremy Schmutz
… human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed … assembly, and improvement strategies for de novo sequencing of eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the … at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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The Fungi That Survive In Antarctica
… fungi are microscopic and mighty. They survive everywhere from Antarctica to Joshua Tree National Park, despite … organisms survive hotter, drier climates. So University of Tuscia researchers Laura Selbmann and Claudia Coleine are working with scientists from around the world – and the JGI – to understand them …
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First Monoploid Reference Sequence of Sugarcane
… . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets of chromosomes (they are “polyploid”) and their complex … platform (http://southgreen.cirad.fr). For the portion of the work conducted by the Joint Genome Institute and the …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome … New Investigator proposal, and receiving feedback from reviewers, was invaluable in preparing the large-scale …
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THE Bioenergy Tree
… The US Department of Energy’s favorite tree is poplar. They’re the fastest … plants to harness for bioenergy. In this episode, hear from Oak Ridge National Laboratory scientists who have … to making poplar an economical and sustainable source of energy and materials. …
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