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High-quality PacBio draft genome sequences of 17 free-living Bradyrhizobium and four related Nitrobacteraceae strains isolated from arid soils in the Santa Catalina Mountains of Southern Arizona
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Graduate Students Get Thesis Research Opportunity at the JGI
… Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program … result of the latest call , a total of 70 graduate students from 52 universities were selected to carry out part of … of scientists.” For her project, “Microbial Community Structure and Methane Production in California’s Canal …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements … single cell genomics by collecting nearly 500 single cells from a single low diversity hot spring sediment sample. … different recombination profiles. This is akin to the structure of social media networks where one social media …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a local dry-cleaner. Researchers  identified two … site. The Impact The Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) was enacted …
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High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T
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Dan Rokhsar
… directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … computational methods applicable to the diverse eukaryotic species, which they have applied and refined in the … and Development after his research interests shifted from condensed matter physics to computational biology, …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate change: pulling … cells, and both organisms rearrange their cells around this structure to facilitate sharing.  Recently, researchers have … as a reservoir for carbon compounds that plants generate from carbon dioxide they take in. In this way, encouraging …
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Len Pennacchio
… Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … Scientist at Lawrence Berkeley Laboratory, and Adjunct Professor at UC Berkeley. Dr. Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University where …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… with excitement and determination as they came onsite. From data carpentry to science communications, their … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … Theo Loreaux and mentors Simon Roux and Frederik Schulz, Structure Prediction to Annotate Novel Viruses: the Case of …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … can yield sugar monomers, it’s only with the aid of specialized bacterial enzymes. Honey bees rely on their gut … Gilliamella,  which mostly resides in the bee’s ileum, a structure analogous to the human small intestine; and  …
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Better Genome Editing for Bioenergy
… A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in microbial oil … Department of Energy’s goal of producing sustainable fuels from alternative sources. Moreover, the team says the … MB) and NSF  1706545 (IW). HA and JW were supported by the Office of Naval Research under grant  N00014-15-1-2785 . JW …
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