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For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one … to the public data repositories over its now 20-plus-year history. In 2019, the countdown has begun to the June … the Biosciences Area and among our Berkeley Lab colleagues, particularly with the other user facilities including the …

DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE …

… focused on building tools to facilitate expert curation of human gene models in support of JGI’s contributions to … metazoans and plants. Working with a talented team of scientists and software engineers, Dr. Goodstein currently leads … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …

Dr. Visel joined the DOE Joint Genome Institute in 2010. As the … Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, … chromatin signatures reveal a regulator of lipid metabolism in microalgae .  Nature Plants 1: 15107 Lupiáñez …

… conditions. A recent study shows that when salinity is reduced in its environment, this alga reveals a … ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … active under different conditions. This was facilitated in part by RNA library preparation and sequencing from the U.S. …

In this short video, UC Merced undergraduate and graduate … And also specifically, it sparked my interest in bioformatics, so that’s what I’m gonna take with me to the … grow up with computers, and it seems like my younger counterparts are a little bit stronger in computing, so I was kind …

JGI’s plant portal Phytozome . Although the Data Portal is currently only accessible via Phytozome, the improvements … from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal is a … said Linda Setchell, a Truss product manager who is part of the joint JGI/Truss team. Based on Google Analytics …

… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … specific sequence of these four letters represents an organism’s genetic code, or genome, which underlies physical … functions of the genes encoded in the genome sequence is part of the integrative science mission of the U.S. …

… — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, land plant evolution. Recent findings in Ceratopteris richardii show a long history of dynamic evolution and … and the lessons they can teach us, are why the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE …

… reported in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which … including over 28,000 unique MCP sequences.  Further analysis led to the identification of 328 “high quality” (based on …

… a single snowflake on a colored-in page of that book. Published online September 28, 2022, in Cell , a team led by … Center for Biotechnology Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then …

… their work delivered during the 5th anniversary celebration of the internship program. Candace Cole, UC Merced JGI Mentors : Ben Cole & Axel Visel, Genomics of Plant-Microbial Interactions “The summer internship has further …