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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
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The Power of One, Amplified
… A preview of how large-scale single cell genomics … of microbial genomes directly from environmental sequence data, by piecing each genome together from large mixtures of … represented by enough single cell genomes to facilitate an analysis of within and between population heterogeneity by …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, … he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the … mutant collections, transformation technology, epigenetic analysis techniques) and utilizing these resources to …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing … in the next generation of flowering vegetation. In return for their services, bees eat plant nectar and pollen. Nectar … that interested the authors was that an evolutionary analysis of  Bifidobacterium strains in honey bees and …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … of human chromosome 19 The DNA sequence and comparative analysis of human chromosome 5 The sequence and analysis of …
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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data science efforts support users, advance foundational … in studies of complex biological and environmental systems. We optimize our service to the community through …
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Annual Genomics of Energy & Environment Meeting
… Thank you for joining us at the 2024 DOE Joint Genome … infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – that the JGI …
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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High-Quality Draft Genome Sequences of the Uncultured Delta3 Endosymbiont (Deltaproteobacteria) Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis
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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation
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Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal … of fungi, by lifestyles. The machine “learned” to identify data generated in part through the 1000 Fungal Genomes … known to infect most major food crops and feedstocks for biomass and biofuel production. Learning about the …
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