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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated … on giant virus diversity, and how sequencing and bioinformatics have sped up the study of giant viruses. The … This work was conducted by the US Department of Energy Joint Genome …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … challenges, characterizing viruses is a key step. For decades, though, many viruses have been somewhat … in soil microbiomes could allow for more accurate ecosystem modeling. In a different vein, characterizing CRISPR defense …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is … also tried to hone in on the function of the genes via 3D modeling, and comparing structures of the unknown to those …
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The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … within their rumen. There is another climate-minded reason for studying rumen: Livestock live off plant matter, and their rumen are highly capable of breaking …
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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett Baker’s lab at … the SCGSR research experience was “an ideal opportunity for me to get real-world experience.” As he finalizes his … as a computational biologist. My primary future goal is to form a startup.” …
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JGI at the AGU Fall Meeting
… This year the AGU Fall Meeting, with the theme “Science is … hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest … of Arizona: “Spatial metabolic profiling in roots reveals plant specific responses to drought at the Biosphere 2 …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery … functions in processes ranging from nutrient cycling to plant health and growth. Developing a scalable computational … a team of researchers has been working on improving methods for isolating and characterizing entire microbial genomes …
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JGI-UC Merced Interns Share Their 2021 Experiences
… 13 interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone science presentation … in professional development enrichment activities. For some students in the 2021 cohort, this was their first …
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Charting Progress toward Professional Goals
… Select interns look back on meaningful lessons from their summer experiences at … next generation of STEM professionals. Students can apply for internships and work onsite with an experienced … You learned a lot about how to work with these various models and trial and error, and what it's really like to do …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. … 2019 in Nature Communications , two research teams joined forces and data sets to describe bacterial genomes for … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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