Search

… these sequences may be tainted by the presence of non-viral genes. Up to this point, there has been a lack of fast and … (contigs) of proviruses flanked on one or both sides by genes from the host organism. With the virus-host boundary … methods, it was possible to distinguish between metabolic genes found in the viral genome versus those from the host …

… researchers came from two environments: natural forests and plantations managed through human intervention. By … Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic profiles — combined … Collective … First-of-its-kind integrated dataset enables genes-to-ecosystems research … Datasets … Datasets … From …

… at Berkeley Lab. Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed in several Lab collaborations. The JGI’s single cell genomics expertise led to the identification of a new … what happens at all levels and developing models for cellular properties, communities and ecosystems.” Building …

This shorter episode is about a tiny, single-celled alga – Chlamydomonas reinhardtii – that’s managed to have a big impact. UC Berkeley plant biologist Sabeeha Merchant explains why she works on … and what it has to teach us about other organisms – like plants. [ Editor’s Note: Merchant is also a faculty …

… methanogenic archaea use one of three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or … these samples by sorting the microbes into small pools of cells that were then sequenced separately. From these … collected. The team noticed some of the genomes diverged evolutionarily from other previously discovered genomes. …

… of the wider genomics community. Jan. 13 workshop: BER Plant Genomic Science In this workshop, we will present … genomic sequence information to BER funded activities of plant systems. We will describe how to apply for a project … and how you can use the KBase system to accelerate your plant genomics research. …

… global RNA virome reveals diverse clades of bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. … map of urban microbiomes and antimicrobial resistance. Cell . 8674:00585-7. Nayfach S et al. 2021. CheckV assesses … of Human Microbiomes Reveal Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | …

… for non-model organisms, modulating microbe-microbe and plant-microbe interactions in various environments to … metabolite biosynthetic gene clusters in bacteria, Cell Chemical Biology , 2022 … R&D100 Award finalist 2019 …

What grass is a prized ornamental and a bioenergy plant? Meet Miscanthus , an attractive addition to your … biology and the economic terrain to help make the plant a viable alternative to fossil fuels. …

… now applying his internship lessons on presentations to peatlands Travis Lawrence sits in his backyard in Tennessee — … example, despite taking up only about 3% of the planet’s landmass, peat moss and their subsurface bogs hold over 30% … was just beginning to develop and expand into the world of evolutionary biology. And around that time, a collaborative …

Shulse et al. 2019. Engineered Root Bacteria Release Plant-Available Phosphate from Phytate. Appl Environ … et al 2018. Mutant phenotypes for thousands of bacterial genes of unknown function. Nature 557:503-509. Blow et al 2016. The Epigenomic Landscape of Prokaryotes. PLoS Genet 122:e1005854. Nord Et …