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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … are even less known than DNA viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as … on mining prokaryotic viruses together, learned from JGI’s Nikos Kyrpides that his Microbiome Data Science group …
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Complete Genome of Serratia sp. Strain FGI 94, a Strain Associated with Leaf-Cutter Ant Fungus Gardens
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Complete Genome of Enterobacteriaceae Bacterium Strain FGI 57, a Strain Associated with Leaf-Cutter Ant Fungus Gardens
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with … own perspectives. The interns from this cohort and their JGI mentors are listed below, along with their project focus … Ecology & Evolution of Self-Catalytic Introns across Earth’s Microbiomes Sonia Vargas and mentors Tomas Tyml and …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of … August 6th? All URLs with a domain of  https://phytozome.jgi.doe.gov will be forwarded ( where possible ) to their corresponding pages at  https://phytozome-next.jgi.doe.gov . If a genome from v12 is present in v13, the …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through … reinforced by the  Fort Lauderdale Agreement (2003), the JGI recognized the need to engage the community to inform necessary changes to JGI data policies. Since completion of the HGP, the JGI has …
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Cataloging the Microbes that Manage the Health of River Systems
… systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University … program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established … and metatranscriptomic sequencing was performed at the JGI under a Community Science Program and the University of …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a … ecosystems and organisms than ever before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. Last year, the JGI surpassed three Petabases of data sequenced — that’s …
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Learning to Look
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an … viruses,” said the study’s lead author Simon Roux, a JGI research scientist in the  Environmental Genomics group … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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New and Improved: Eucalyptus Reference is Now Accessible
… The new improved genome assembly generated through the JGI’s Community Science Program will help support targeted … help from researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … National Laboratory.  Now, enabled once again by the JGI’s Community Science Program, University of Pretoria …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science … call for proposals.  Tips: Contact us with your questions (jgi[email protected]) Carefully read our proposal … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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DAS Tool for Genome Reconstruction from Metagenomes
… genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity Program (ETOP) , … samples. The work aligns with the ETOP mission of providing JGI users with the most current technology and expertise in … challenges. In Nature Microbiology , a team led by longtime JGI collaborator Jill Banfield of the University of …
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