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Introducing New Members of the JGI User Executive Committee
… new members to their User Executive Committee (UEC) – Jack Gilbert, Ashley Shade, and Jason Stajich! They join six … of members. Each of the researchers had their own reasons for wishing to serve on the UEC. For microbial ecologist … sees the JGI’s open application process for proposal calls as an opportunity to broadly increase access. He aims …
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Mindfully Moving JGI
… JGI is in the process of shifting its operations from Walnut Creek to the heart of … Walnut Creek, after countless generations of sequencing platforms (up to 120 sequencing machines at maximum) maintained … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex sugarcane genome . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many … This work was supported by the International Consortium for Sugarcane …
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Introducing New Members of the JGI User Executive Committee
… new members to the JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska of Cornell … of members. Each of the researchers had particular reasons for wanting to serve on the UEC. Hatzenpichler, who studies …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these hosts are microbes like … approaches, researchers have created a new program called iPHoP (pronounced “eye-pop”,  freely available online …
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Extracting the Secrets of Secondary Metabolites
… CRAGE-CRISPR combo helps further demystify biosynthetic gene … secondary metabolites, those molecules not essential for growth yet essential for survival, may now be easier to … accurately editing genomes, its effectiveness has historically been limited due to the lack of robust tools available …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring multiple omics methods to examine … each compound are encoded in a dedicated set of genes called a biosynthetic gene cluster. However, most of these … This work conducted by the U.S. Department of Energy Joint Genome Institute …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into … by minimizing flood risks and filtering water. Peat formed there over thousands of years sequesters more carbon … chromosomes ever identified in the plant kingdom. Specifically, researchers found that female plants within a species …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with … The work (proposal: 10.46936/10.25585/60008105, WIP proposal ID: 508017, …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. … regulation is critical to ensuring genes vital for growth and survival across various environments are … factor. Predicting those relationships bioinformatically is almost impossible, and the experimental process for …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, … technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University of Tokyo PhD, …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, … he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development of numerous genomic resources that fostered the widespread …
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