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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring … tracking gene activity and chemical output over time, the team mapped how the bacterium redirects its energy, building … a template — integrative analysis of multiple omics data from various environments — that JGI users can leverage to …
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JGI & KBase at PAG XXVII
… The Plant and Animal Genome XXVII Conference (PAG) takes place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  DOE … will be at Booth 509. Stop by and chat with representatives from KBase and the JGI about collaborative science …
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Leo Baumgart
… San Diego. As the Sequencing Technology Implementation Lead, he directs a multidisciplinary team responsible for piloting and operationalizing new … science projects spanning bacteria, fungi, and plants. His team is also developing single-nuclei sequencing methods to …
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Viruses Reprogram Cells into Different Virocells
… But if the duck gets infected by a virus so that it no longer looks or quacks like one, is it still a duck? For a team led by researchers from The Ohio State University and the University of … A portion of this research was performed under the Facilities Integrating Collaborations for User Science (FICUS) initiative through an award to …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the … sequence of the complex switchgrass genome , using samples from common gardens growing across the country. The national … genome sequence of green millet ( Setaria viridis ). The team of researchers at the Danforth Plant Science Center …
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Plant Program
… challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and adapting to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing humanity. A major focus are …
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have … A & M and Great Lakes Bioenergy Research Center) and his team set out to compare different varieties of sorghum. … Sorghum (EPICON) begins. Peggy Lemaux (UC Berkeley) and her team studied sorghum plants in drought conditions for three …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… 5,000 times bigger than most bacteria. To put it into context, it would be like a human encountering another human … symbionts in sulfur-rich mangrove sediments not far from his lab when he first encountered the bacteria. “When I … Program and is one of the article’s senior authors. The team was also compelled to study these large bacteria in …
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Expanding Virophage Diversity
… DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with … maturation. Recently reported in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome … have similarly gone up from 13-25 to 12-39. “Overall,” the team concluded, “we provide a global analysis of the …
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Nikos Kyrpides
… at the University of Illinois at Urbana-Champaign and at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome Data … BA in Biology, Aristotle University of Thessaloniki, Greece PhD in Molecular Biology and Biotechnology, …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have … host to replicate. Sequencing genetic material directly from samples sidesteps these challenges, since it doesn’t … viruses. In 2016, Nikos Kyrpides at the JGI led a team that combed datasets from around the world, finding …
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An Integrated Dataset to Understand Ecosystem Interaction
… tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. … processes for the first time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as … Summary The 27 samples studied by researchers came from two environments: natural forests and plantations …
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