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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science To better understand how beneficial … This research was supported by the National Science Foundation and the National Institutes of Health. The work conducted by the U.S. …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to … from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms … decoded the genome of an oil-producing green alga, and demonstrated precise gene targeting in the genome in the … also simplifies metabolic modeling and pathway optimization for enhanced lipid production. Also notable, researchers …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically … was made possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools … to accurately edit genomes (that is, repair gene mutations, and either delete or add genes in a precise fashion) …
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Four Researchers Join JGI User Executive Committee
… have been elected to the User Executive Committee of the Joint Genome Institute, a Department of Energy user facility located at Lawrence Berkeley National Laboratory. Holly Bik of the University of Georgia, … worked closely with both the Fungal & Algal Program and the Microbial Program over the past decade in gene regulatory …
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JGI & KBase at PAG XXVII
… The Plant and Animal Genome XXVII Conference (PAG) takes place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE Joint … a list of talks relevant to JGI science at PAG XXVII. On January 14, JGI Plant Program head Jeremy Schmutz and  …
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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent … JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate in professional development … Blurring the Line Between Plasmids and Phages … Evolution of the Mitochondria Internship …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo … metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers have … complete genomes from varieties that diverged over a million years ago. The hallii variety thrives in desert environments, while the filipes variety is less drought tolerant …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… The  National Ecological Observatory Network (NEON) is a network of field research sites designed to collect … data to better understand how U.S. ecosystems are changing.  Through the  “Facilities Integrating Collaborations … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day … In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia … award at  https://doi.org/10.46936/10.25585/60001405 ) conducted by the US Department of Energy Joint Genome …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over the past billion years, fungi have spread … of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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