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… fills us in on the kind of decay that makes shiitake mushrooms special. This week, he and 39 collaborators published a paper tracing how these mushrooms have evolved.  …

The Sequence to Function: Applications and Analysis for the …

… impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program. … first legume species with a published complete draft genome sequence. At the time, the vital global source of both … of seed oils as biofuel. After analyzing the original sequence, Gary Stacey of the University of Missouri said he …

… of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural similarities in proteins that low sequence identity may belie. The technology he’s using is … Deep learning algorithms can vectorize faces… … so, why not proteins?         … The U.S. Department of Energy …

… of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … ecotypes because, historically, they have used the sequence of a “marker gene,” namely the 16S ribosomal RNA … bioinformatics tools designed for analysis of DNA and RNA sequence data.  … Datasets … BBTools …

… . 11(1):5125. Krizsán et al (2019) Transcriptomic atlas of mushroom development reveals conserved genes behind complex … et al (2019) Megaphylogeny resolves global patterns of mushroom evolution. Nature Ecol Evol . 3(4):668-678. Ahrendt … and lignocellulose degradation encoded in the genome sequence of  Schizophyllum commune . Nat Biotech.  2010; 28: …

Every year, the JGI sequences around 35,000 samples — from plants, algae, …

… to some people more about down the road. Email Nigel! He’ll sequence whatever you want!  [LAUGHTER]  NIGEL MOUNCEY: We …

… with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a … comes from finally having an answer to the question, “Why bother keeping this?” For Stuart McDaniel’s lab at the … Pangea. McDaniel’s lab continues to work on the enigma of why the ancient moss sex chromosomes continue to evolve so …

… access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated … now uses laser microdissection to selectively isolate and sequence microbial aggregates after first imaging with …