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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are … ones, a trend that threatens to destabilize the delicate marine food web and change the oceans as we know them. At … than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem …
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CSP Large Scale Call
… and predictive biology, modeling and biodesign — questions of relevance to DOE’s Biological and Environmental Research … While applications will be accepted that address any aspect of these mission areas, priority will be given to projects that address the areas of special emphasis that are listed in the call and leverage …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … to defend against RNA,” Roux noted, “although it’s unclear why this is so rarely detected.” Developing Approaches for … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments
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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific … supported, sample/capacity limits, and instructions.  Many of the submissions are done using web-based forms.   To view …
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User Executive Committee Charter
… users and their science including technical capabilities offered, proposal review procedures, and the annual user … recommendations to the JGI regarding technical capabilities offered, including areas where more or less capacity is … annual JGI User Meeting, as well as input on other aspects of the meeting such as duration, location, and cost; …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee … hydrothermal vents – and computationally identifying which sequences represent viruses that were present in the sample. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … cell (seen here in a glass capillary), researchers sequenced and assembled the first complete genome of an … of the tree of life. Used in tandem over the years, metagenomics and single cell genomics have afforded JGI …
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Metagenomic binning of a marine sponge microbiome reveals unity in defense but metabolic specialization
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … The Impact Despite great strides in generating genome sequences for members of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … samples to the JGI for sequencing.  While JGI processed, sequenced, and analyzed the soil samples, the JGI offered 7 … a deeper understanding of both the research process and metagenomics while legitimately contributing to the body of …
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