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Katherine Louie
… metabolite databases by running 1000s of metabolite standards, and development of high-throughput untargeted analysis … A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, Bowen BP, Sundaresan V, Northen TR, et al. …
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Publication Policy
… are involved in processing samples and data generation according to SOPs.  For each individual user project a subset of … of user research. The crucial elements are proposal Award DOI(s), JGI’s ROR ID number, DOE contract numbers Please … in any external publications, and include proposal Award DOIs following the guidelines below. …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… Gardeners and farmers around the country recognize that crop … biomass feedstock for producing sustainable alternative fuels. Common Gardens Are A Community Effort The common … and complex genomes,” said Lovell. “However, new sequencing technologies have allowed us to build the necessary genome …
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Meeting Code of Conduct
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Hiroshi Otani
… activity is focused on developing and implementing new technologies and methodologies that facilitate discovery of …
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User Advisory Committees
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… biomass which could then be converted into sustainable biofuels . For its importance to the DOE mission, switchgrass … following year saw the beginnings of common switchgrass gardens to track crop productivity across 1,100 miles and … genome built off more than a decade of work; as sequencing technologies advanced, assembly and annotation of the genome …
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Better Living Through Bioenergy
… Biofuels and bioproducts are a way to kick our addiction to fossil fuels. In this episode, we peek into how scientists Aindrila …
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Natural Prodcast Episode 17: Cassandra Quave
… I really can’t recommend it enough to this audience. The hardcover version is out now in stores and online, and there’s … in some way or another. But today, we have someone who, weirdly, I haven’t, I think, ever been in a room with or spoken … looked at these compounds through classic spectroscopic technologies, NMR, mass spec, whatnot and then we’re …
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Natural Prodcast Episode 2: The Primer, Part 2
… that lives with them that produces those. So it’s not a hard and fast rule, but, generally, animals do not have … that organism before, you might not recognize that this weird, fatty acid synthase kind of system, like, maybe this bacteria just makes fatty acids in a weird way. Or maybe it’s a secondary metabolite. And so we’ve …
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Accelerating Metagenomics Discoveries with Deep Learning
… on generating vector representations of proteins in order to conduct more efficient protein sequence alignments. … — a convolutional neural network, called  ResNet 34   — in order to vectorize protein sequences. Sevim is part of the … and scientists in the Computational Resources Division (CRD), in order to create more useful tools for the …
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Mindfully Moving JGI
… of the JGI’s sequencing platforms were turned back on. A third sequencing platform was scheduled to resume production … the moving process began in 2017 with annual one-day cleanups. During those days, they were asked to “KonMari” … Lab . “While we’re getting rid of stuff, our effort in this cleanup is not just to clean out the building.  We don’t …
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