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Natural Prodcast Episode 2: The Primer, Part 2
… maybe obvious or notable. We are still in – not an early stage. I think we can identify most secondary metabolism … yeah. I mean, you might be producing things at different stages of growth or different signals from the environment … molecules and their discoveries over a stretch from 1940 to 2000. As you can see, from the 1940s, into the 50s …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… and Gene Integration . ACS Chem Biol. 2019 Apr 19;14(4):704-714. doi: 10.1021/acschembio.8b01107. Epub 2019 Apr … see this  Metabolomics Data Analysis – Tips from Users page.  Q:  Is the metabolic study able to build a profile …
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Crysten Blaby-Haas
… 2022 – present Alumni Award, MCS, University of Florida, 2024 Congressional Recognition, Women’s Services Honoree, 2022 … Postdoctoral Award for Research Excellence, 2015 34th Annual Women’s Recognition Award for Science, 2020 NIH … 2002 – 2006 HCA Foundation Scholarship, 2002 & 2004 Graduate Student Award, 59th Lindau Meeting of Nobel …
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Plant Pan-Genomics Comes of Age
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… and they’re probably influencing the microbes there,” said Simon Roux , the Viral Genomics Group Lead at the JGI.  To … Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. … world, including 3,908 isolate reference DNA viruses and 264,413 computationally identified viral contigs. Since then, …
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Clades of huge phages from across Earth’s ecosystems
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Learning to Look
… use to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … isolate and extract viruses,” said the study’s lead author Simon Roux, a JGI research scientist in the  Environmental … in 3,609 (6 percent) of the 56,868 microbial genomes and 2,249 of the 6,412 (35 percent) metagenomes mined for this …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… retired Naval Commander retires from Berkeley Lab. On June 24, in what was billed as a typical monthly JGI All-Hands … (Director), Michael Brandt (Operations Deputy), Horst Simon (Science Deputy), Jeff Blair (Chief Laboratory … you did that with tremendous grace under pressure.” Horst Simon touched upon the overheated server room and subsequent …
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Glacier ice archives nearly 15,000-year-old microbes and phages
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Extreme dimensions — how big (or small) can tailed phages be?
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Thousands of small, novel genes predicted in global phage genomes
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Applying Viral Genomics Expertise to Understanding the Human Virome
… , leads one project with JGI colleagues Antonio Camargo and Simon Roux. Kyrpides is part of another project led by Owen … The work is supported by NIH Common Fund grant 1U01DE034196-01. The JGI team, including Kyrpides, Camargo, and … CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , …
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