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Correlation-based network analysis combined with machine learning techniques highlight the role of the GABA shunt in Brachypodium sylvaticum freezing tolerance
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Natural Prodcast Episode 10: A Primer on Genome Mining
Natural Prodcast, a podcast about natural products and the science and scientists of secondary metabolism. Welcome back … found in Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you … if an order is uncultured (blue; represented only by metagenome-assembled genomes or MAGs) or cultured (gray; …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … 190 families with one. There are another 100 genomes in progress and 200 that are pending samples from users. …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … the SODmap Mobile app enabled SOD Blitz participants to geotag specimens they collect. Later, those are annotated with … health of the tree. While drought conditions may slow the progress of SOD, the debilitated trees become susceptible to …
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to … and characterizing microbial diversity, work in the Metagenome Program uses several experimental approaches to … environmental viral populations. Enabling microbiome data science:  The JGI supports microbiome data science by …
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Natural Prodcast Episode 5: Brad Moore
Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  Brad Moore, … Natural Products conference, which took place last January 2020 in San Diego. San Diego, of course, is the “home turf” … marine natural product biosynthesis and at the beginning stages of connecting molecules and genes. And then genomics …
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Crysten Blaby-Haas
Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a … Berkeley lab. She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working with …
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Natural Prodcast Episode 4: Nancy Keller
Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Welcome back to … we discussed in the primer podcasts ( part 1 here , part 2 here , and part 3 here ), which you should be able to find …
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Tapping the treasure trove of atypical phages
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What Happens To a Rainforest When You Dial Up Drought?
… happens to that storage when a rainforest hits a drought. Tag along with their experiments in a fully enclosed, human-made ecosystem: Biosphere 2.      …
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Protocols
Weight DNA extraction: … RNA Extraction Protocols: … iTag protocols: …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American … (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the …
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