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Jeremy Schmutz
… working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he constructed … Bennetzen, JL & Schmutz, J et al. 2012. Reference genome sequence of the model plant Setaria. Nature Biotechnology … J et al. 2010. Genome sequence of the palaeopolyploid soybean. Nature 4637278: 178-183. … Thomson Reuters Highly …
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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct … at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts …
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JGIota: The Algae Nicknamed ‘Chlamy’
… episode is about a tiny, single-celled alga – Chlamydomonas reinhardtii – that’s managed to have a big impact. UC Berkeley plant biologist Sabeeha Merchant explains why she works on this alga, how researchers managed to sequence its genome, and what it has to teach us about other …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have … through nitrogen-fixation and holds clues for maximizing soybean, the common bean’s close relative, as a biofuel. To … of the JGI; and Scott Jackson of the University of Georgia sequenced and analyzed the genome of the common bean. That …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, … send their samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks …
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NeLLi — Symposium on New Lineages of Life
… “NeLLi 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the … Overview of Symposium Goals Metagenomic and single-cell sequence data have provided a means to access novel … Hatzenpichler, Montana State University Maggie Sogin, UC Merced   …
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Igor Grigoriev
Institute in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical industry. He … Institute, a Senior Scientist at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and … and lignocellulose degradation encoded in the genome sequence of  Schizophyllum commune . Nat Biotech.  2010; 28: …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
A nuanced understanding of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of the Earth’s carbon as well as material that can be … Laboratory, and the HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team …
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JGI-USCCN Strain Sequencing Opportunity
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… recognize that crop varieties grow best in certain regions. Most plant species have adapted to their local … Identifying and breeding varieties that have high productivity across a range of environments is becoming … (Berkeley Lab), has produced a high-quality reference sequence of the complex switchgrass  genome using samples …
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VEGA Symposium
… with NIST,  the goal of the Viral EcoGenomics & Applications (VEGA) symposium was to bring together a “Viral EcoGenomics” community to foster discussion on how to best capture and characterize uncultivated … for the event photos. Keynote Speakers Katrine Whiteson , UC Irvine Chase Morgan , UC San Diego Britt Koskella , UC …
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Short sequence motifs, overrepresented in mammalian conserved non-coding sequences
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