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A Natural Mechanism Can Turbocharge Viral Evolution
… the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at … industry applications. Summary In their recently published Nature Communications article , the team used publicly … Environmental Research (DE-SC0004632, DE-SC0010580, DE-SC0016440), and acknowledge the IsoGenie Project Team. S.R., …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a number … to boost understanding of environmental viruses. In 2016, Nikos Kyrpides at the JGI led a team that combed … Since then, IMG/VR has grown exponentially. The latest release, IMG/VR v4 features over 15 million viral genomes, …
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JGI Early Career Researchers Featured in mSystems Special Issue
In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives … rare microbes. The technique was applied to a recent Nature Communications paper, uncovering giant virus … Research and Development (LDRD) Program at Lawrence Berkeley National Laboratory (Berkeley Lab). JGI is a DOE …
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JGI at the AGU Fall Meeting
… research and tips for submitting successful proposals: Collaborate With a U.S. DOE User Facility: Learn About … 4pm CST Convention Center, Poster Hall D-F poster B25J-1604: Eoin Brodie, Berkeley Lab: “Uncovering microbial metabolic trajectories …
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Partnerships: Adopt-A-Genome
… a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation … datasets. It includes JGI-sequenced and publicly available datasets encompassing >150,000 isolate genomes, … Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522 R Robertson, et. al.  …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number … that’s a good niche market for soybean.”  Upon its initial release in 2009, the soybean genome sequence immediately … noted that even prior to the sequence being published in  Nature , immediate progress had already been made …
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How to Submit Sequencing Samples
… needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing … have any questions, please contact your Project Manager or jgi[email protected] . … 1) Review JGI sample QC … receive automated emails as raw sequence data becomes available, and as analysis is completed. You can view the status …
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JGI Launches Latest Strategic Plan
… of the Integrative Genomics Building—the new home of the JGI and KBase in the heart of the Lab’s 200-acre campus—with … parallel with the intricate move preparations, the JGI has released its newest 5-Year Strategic Plan: Beyond Basepairs … scores of individuals, including JGI staff, Biosciences and Berkeley Lab leadership, the half-dozen JGI advisory …
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Graduate Students Get Thesis Research Opportunity at the JGI
… part of their thesis research at one of the DOE national laboratories or national user facilities. As a result of the … SCGSR award is Mo Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of … LBNL scientists and have access to unique lab resources. Berkeley Lab is the home to an exceptional caliber of …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a number … and thrive — some varieties grow their leafy stalks 16 to 18 feet into the air. Beyond being a staple grain … The JGI updates its Sorghum bicolor reference genome and releases it to the community. 2014: GENCODE project begins. …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers focused on the full … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … research and innovation program (grant agreement no. 101001675-ORIGINS) and from the FRM/FSER (FRM/FSER202302017064) …
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JGI@25: Solving the Mystery of the Missing Oil
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that … spilling into the Gulf of Mexico, researchers at Lawrence Berkeley National Laboratory (Berkeley Lab) were on the …
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