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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint … of secondary metabolism.  DAN: Hey there and welcome back for Episode 8 of Natural Prodcast. This week, we have our … proteins interact with each other. There’s a lot of leading data from excellent groups about specific interaction …
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A Step Toward Controlling Soybean Rust
… The United States  is the world’s leading soybean producer , and soybeans … , Sebastien Duplessis of the French National Institute for Agricultural Research (INRA)  proposed sequencing a … soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome sequence in …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted … — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Webinars on Offerings & Capabilities
… Below are a list of webinars that can help you through the submission … understanding the capabilities and resources available for your project. Watch all the webinars here . You can find additional webinars covering how to use our data portals here.  …
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DNA Synthesis Program
… The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene … bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on … The DNA Synthesis Program plays a central role in advancing … The DNA Synthesis Program aims to generate large datasets to explore sequence-function relationships, …
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Fungal & Algal Program
… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and … The Fungal & Algal Program harnesses cutting-edge sequencing … The program’s focus is on large-scale sequencing efforts that survey the vast phylogenetic and ecological …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is … of genomics through open access to resources and promoting data sharing to accelerate discovery and maximize the … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 …
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Integrating Experimentation with Data
…   Registration for this meeting has closed           Registration fees:                   … Automated Laboratories: Integrating Experimentation with Data” was held at the Seattle Marriott Waterfront in … The JGI and EMSL are U.S. Department of Energy (DOE) Office of …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC … flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC … the National Microbiome Data Collaborative where she leads infrastructure and user-centered design efforts. Dr. Fagnan …
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