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Pan genome of the phytoplankton Emiliania underpins its global distribution
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Genome Insider
Genome Insider is a podcast that showcases the work of JGI collaborators in brief forays, connecting audiences … understand — and harness — the superpowers encoded in plants, fungi, microalgae, environmental viruses, and …
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JGI Advisory Committees Code of Conduct
Guiding Principles All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to … of the JGI advisory committees, we welcome and encourage openness, candor, transparency, and creativity framed by …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… ra-MOR-um) the genus in Latin translates to “plant destroyer” and it has served as just that on a … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … of the SODmap Mobile app enabled SOD Blitz participants to geotag specimens they collect. Later, those are …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… (Toby) Kellogg and other researchers at the Danforth Plant Science Center (Danforth Center) drove up and down the … led the data analyses and assembled the green millet “pan-genome” (a set of 51,000 genes that represent all the … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Programs & Platform Leads
… the JGI plays a leadership role in enabling the frontiers of research related to DOE’s missions in bioenergy, carbon … drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute … Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research groups. The … resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the gene …
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Better Crops With a Pointillist Approach to Plant Genomics
In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and more. And …
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Ancient Algae Reveal Secrets of Plant Evolution
Research uncovers the genetic foundations that helped plants conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , … plants, based on shared genetic traits and evolutionary lineage. They provide a unique window into the adaptations that …
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Metabolomics
… functional genome annotation, improves understanding of the role small molecules play in diverse biological … sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform … samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as different types …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. … plant lineages makes it ideal for comparative genomics studies, offering insight into genes critical for …
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Dan Rokhsar
… 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards … in the sequencing and evolutionary analysis of over fifty plant and animal genomes. He currently leads the JGI’s … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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