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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” … than any individual genome highlighting the fact that the genetic information in a single reference genome is … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was … For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes and DOE … Jeremy Schmutz is the Plant Science Program Head at the JGI. Click to learn more …
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Filling in the Plant Tree of Life
… What if we understood plants and how they adapt to their ever-changing environments better? We could unlock new innovations to drive more productive food, medicine, and bioenergy crops. …
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A Sorghum Pangenome Opens More Doors to Discovery
… addition to bolstering sorghum fields, understanding this plant eventually offers avenues for translating its … for this plant. In other lines around the world, much more genetic diversity exists.  Now, researchers have brought … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… previously unseen — is, in fact, a microscopic water mold, genetically related to such aquatic species as diatoms and … ra-MOR-um) the genus in Latin translates to “plant destroyer” and it has served as just that on a … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Natural Prodcast Episode 19: Bill Fenical
… local marine environment. I went out and picked up marine plants, I picked up animals. And I asked the simple … now. My perception is that a lot of that competition was driven by drug discovery and the money that’s available … for culturing, and then of course using modern phylogenetic tools measuring genes, the 16S gene, and comparing …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… The Joint Genome Institute and the Molecular Foundry have launched a joint Critical Minerals and Materials proposal call . This represents a … The JGI supports remote users. Users conduct experiments in their own labs or collect field samples. Depending on the …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida … Their data report, which provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was … the project with him, I was inspired by his enthusiasm and drive to give his students this experience. My current …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute … Why is a resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the … we found was related to tissue-specific gene expression variation within genotypes. The root transcriptome was more …
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A roadmap for equitable reuse of public microbiome data
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth … (Toby) Kellogg and other researchers at the Danforth Plant Science Center (Danforth Center) drove up and down the … pan-genome and accessions allow us to see presence/absence variation easily and to find genes missing in particular …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data discoverability … Download plant, algal, fungal and microbial genomes and metagenomes — …
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