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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and analysis will … Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.    Proposal Call FICUS …   Learn more about our individual calls and other opportunities …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI. … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and … 1) Complete Sample Metadata form Sample metadata is collected via …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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A roadmap for equitable reuse of public microbiome data
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Natural Prodcast Episode 15: Katherine Duncan
… Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today … based on the pieces they break into. So not only do you get structural information, you get maybe an idea, oh, well, … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Plant Program
… With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in … The Plant Program advances our understanding of plants’ biological and ecological roles to foster sustainable solutions for energy, agriculture and …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, … Systems Engineering group lead, the Data Portal reflects a structural shift in data access. Users were previously … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … that showcase our collaborations and capabilities to enable great science that will help solve energy and … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and … Department at the Joint Genome Institute. His team of engineers and scientists builds and operates the data and … annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled capabilities for …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, … The Metabolomics Program is focused on understanding the critical … metabolites in living systems, particularly as they relate to DOE missions in the bioeconomy, sustainability, and …
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