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Trends in Prokaryotic Evolution Revealed by Comparison of Closely Related Bacterial and Archaeal Genomes ▿
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Natural Prodcast Episode 19: Bill Fenical
… for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill … Wow. It’s all happened so fast. I mean, in terms of human evolution and knowledge, like discovering that the ocean is … it took 15 to 18 years before we were able to convince the diversity of marine ecologists that they needed to consider …
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DOE Metrics
… (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal (hours)**   Actual Total   Actual % Goal   FY … platforms. **Operating Hours target is based on 98% of the total available hours.   FY 2025 DOE Metrics There … (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal (hours)**   Actual Total   Actual % Goal   FY …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … that will help solve energy and environmental challenges. Viruses are everywhere — in soil, the sea and, of course, … aspect of viruses in the environment — their sheer genetic diversity. As pioneers of this field, the JGI has leveraged …
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Learning to Look
… Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … are important from the standpoint of phage-bacterial coevolution and are also useful tools in CRISPR-Cas …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But what trends govern those … small proportion of the sample’s billions of bacterial and archaeal cells — and detected the virus in 34 hosts or 26 …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  Brad Moore, UC San Diego and … it for me. And at the same time, I was taking Chem[istry] classes and those were actually pretty fun. And eventually I …
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MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets
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2025 NeLLi Symposium
…   Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the … of the Tree of Life and latest discoveries toward the evolution of cellular complexity and microbial symbiosis.  … define, quantify, and functionally characterize microbial diversity. The Symposium will also focus on experimental …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … of white. To researchers searching for sequences of RNA viruses in large data sets, their work may be akin to … the world, resulting in a five-fold increase of RNA virus diversity. “The world of viruses around us is vast, and we …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … molecule, lignin. Understanding Lentinula genomes and their evolution could provide strategies for converting plant … 1456588 to D.H. and DEB-1442113 to A.R., the Department of Energy award 0000238431 to D.H., the GENOBIOREF …
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Soil virus offers insight into maintaining microorganisms
… effort, researchers have identified a protein in soil viruses that may promote soil health. The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint Genome … health. Summary Soil viruses are a reservoir of genetic diversity and capable of transferring genes from one host …
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