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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure … to both expertise and infrastructure to facilitate these efforts. Particular areas of emphasis will be the development of tools and infrastructure for microbiome data science, and the development of new …
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Understanding Wildfire Recovery, Starting in Soil
A metagenomic look at the soil microbes present a year after a … The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, … … This work was supported through a USDA NIFA award (2021-67019-34608) to M.J.W. FTICR-MS analyses were performed …
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Metagenomic Sequencing of an In Vitro-Simulated Microbial Community
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Microbial Genomics & Metagenomics (MGM) Workshop
Registration has closed.  The U.S. Department of Energy (DOE) Joint … is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: mgm.jgi.doe.gov   This highly … Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact … fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. R. R. …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
JGI-led team significantly expands the global diversity of large and … viruses (NCLDV) supergroup. The expansion of the diversity for large and giant viruses offered the researchers insights … been co-cultivated with amoeba or with their hosts, though metagenomics is now making it possible to seek out and …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy … The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … Foskett Brown family. … Miscanthus sinensis genome … CABBI Sequences Miscanthus Genome … Datasets … From our partners …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and Lawrence Berkeley National … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … in this publication during her summer internship in 2018. She selected one of the projects posted by JGI fungal …
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Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria
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