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SPRUCE-ing Up Science
… applying his internship lessons on presentations to peatlands Travis Lawrence sits in his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint appointment with the … University of California, Berkeley. Nowadays, Session is an Assistant Professor at Binghamton University in New York. … species. By contrast, “allopolyploids” arise when different ancestral species crossbreed before genome doubling. In …
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Fungal & Algal Program
… Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program … Program harnesses cutting-edge sequencing technologies and advanced genomic analysis to explore the rich diversity …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida … school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer through … able to tell the students that the paper was accepted for publication in a reputable scientific journal. It was …
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Natural Prodcast Episode 17: Cassandra Quave
… Dan Udwary: Hey everybody! Welcome back for Natural Prodcast … episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint appointments … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in … States Department of Agriculture National Institute of Food and Agriculture grant 2018-67015-27495, the United States …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with … also known as “polyploidy,” is common among flowering plants; at least once during their evolution, the genomes of … “Preliminary artificial crossing experiments between ancestral and recent  B. hybridum accessions produced …
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A User-Centered Approach to Accessing JGI Data
… launched last year, it was only accessible through the plant portal  Phytozome . Now the portal offers a way for … limited to accessing data sets within groups, such as plants (via Phytozome) or fungi ( MycoCosm ). “We have made a … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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A Community Resource for Secondary Metabolite Researchers
… shared by most living creatures for energy, growth and reproduction—most organisms produce a set of "secondary metabolites," chemical … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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Secondary Metabolites Program
… of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the organisms producing them, and are often … The Secondary Metabolites Program targets the vast and underexplored reservoir of secondary metabolites …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the “chytrids”).  A … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … and analysis of their data at the time. Following the publication of their paper in 2011, Dr. Sekimoto from …
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Data Ecosystem
… its current partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data … is a connected resource where data from different organizations is discoverable and accessible. Linking the resources of powerful … Through its partnership with NERSC and the DOE Energy Sciences Network (ESNet), the JGI has …
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