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CSP Large Scale Call
The Community Science Program Large Scale Call is focused on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based … All proposals will be externally peer-reviewed for scientific merit, DOE mission relevance, proposed data …
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Partnerships Development Team
Developed in 2017, the PDT was established in part to help better-connect industry to … high-throughput sequencing and other resources at the JGI for projects of relevance to Department of Energy missions. … called chassis-independent recombinase-assisted genome engineering (CRAGE), which offers single-step genomic …
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A toolset of constitutive promoters for metabolic engineering of Rhodosporidium toruloides
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Gene Expression: From On-Off Switch to Dial
Fine-tuning metabolic gene expression helps identify variants in yeast … approach to expression, scientists can now opt for various shades of grey. The ability to fine-tune the … of gene expression by the gradations. The Impact Metabolic engineering could lead to sustainable pathways for making …
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Viral Genomics Group
Microbes drive critical ecosystem functions and affect global nutrient cycling, … overview and major challenges of host prediction methods for uncultivated phages.  Current Opinion in Virology .  49 … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day … relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US … they need. Karolina is working to better understand what genetic features make CAM possible. So, she’s studying …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We … the estimated diversity of Bacteria and Archaea With phylogenetic diversity standing in as a representative measure of …
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The … compounds shared by most living creatures for energy, growth and reproduction—most organisms produce a … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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Metabolic engineering of Clostridium thermocellum for n-butanol production from cellulose
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Genomic and proteomic biases inform metabolic engineering strategies for anaerobic fungi
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Coupling High-Throughput and Targeted Screening for Identification of Nonobvious Metabolic Engineering Targets
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Considering Strain Variation and Non-Type Strains for Yeast Metabolic Engineering Applications
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