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CSP Large Scale Call
All proposals will be externally peer-reviewed for scientific merit, DOE mission relevance, proposed data usage by the applicant/community, and track record of the applicant. For accepted proposals, sequencing, synthesis, metabolomics …
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Informatics Advisory Committee
The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The … on the effective management and strategic objectives for the JGI’s data science, informatics and information technology (IT) …
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Marine Microbe Contains Multitudes
… help regulate the global carbon cycle — fixing, transforming, and respiring carbon. Understanding the metabolisms … of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … cells of the uncultivated SAR324. The constellation of data gave the team unprecedented resolution to study the …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. R. R. … at virus infections. Their genomes include short DNA sequences that code for CRISPR systems, which help bacteria … identified. The JGI researchers surveyed publicly available data in the JGI’s  IMG/M database , information the Probst …
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I-Min (Amy) Chen
… research has been focused on semantic and object-oriented data modeling, and biological data management. She was one … of the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. Dr. … updates and new features. Nucleic acids research Jan 2023 Camargo AP, Nayfach S, Chen I-MA, Palaniappan K, Ratner …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for ‘wanderer’). But they vary … than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem … and stark the biogeographic boundary is between them. The data is somewhat beautiful in that regard,” said Andy Allen, …
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Tour the IGB
… the frontiers of environmental and energy genomics.  For more information about the science depicted, click here . <span data-mce-type="bookmark" style="display: inline-block; …
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Protein structure determination using metagenome sequence data
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BioPig: a Hadoop-based analytic toolkit for large-scale sequence data
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JGI & KBase at PAG XXVII
… collaborative science opportunities. Learn how to apply for a project with the JGI Community Science Program, and … of talks relevant to JGI science at PAG XXVII. On January 14, JGI Plant Program head Jeremy Schmutz and  KBase Co-PI … integrative biology. Researchers who are applying genomic sequence information to BER-funded activities of plant …
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Next generation sequencing data of a defined microbial mock community
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Tanja Woyke Elected to American Academy of Microbiology
… (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The selection process for AAM Fellows is based on their records of scientific … Scientific Achievement , and was among the Lab’s 2015 Women @ the Lab honorees. Woyke’s research focuses on …
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