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An Automated Tool for Assessing Virus Data Quality
Through advances in sequencing technologies and computational approaches, more and more virus sequences are being … first author in the Microbiome Data Science group led by Nikos Kyrpides. To demonstrate its utility, Nayfach applied CheckV …
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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is made of four …
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Identifying the Microbial Cleanup Crew at a Superfund Site
Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency declared the North Railroad …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But what trends govern those … virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the 34 …
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Natural Prodcast Episode 18: A CSP Primer
… round of episodes. If you stick around for the next few months, you’re going to hear my last interview with my … info about the CSP, FICUS, New Investigator and Functional Genomics calls. For my audience, all of these programs can … the user programs at the JGI, and I’m also the head of the microbial genome program. And I’m a scientist here. And have …
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2025 NeLLi Symposium
Registration and Agenda Coming Soon!  Hosted by the DOE Joint Genome … discoveries toward the evolution of cellular complexity and microbial symbiosis.  This is a continuation of the previous … genomic coverage. Experts in cultivation and environmental genomics will work together to develop recommendations for …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  … on mining prokaryotic viruses together, learned from JGI’s Nikos Kyrpides that his Microbiome Data Science group was also …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and biogeochemical … Mike Wilkins and his graduate student Kaela Amundson at Colorado State University have many questions about the microbial communities deep underground, and before the …
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Natural Prodcast Episode 6: Marc Chevrette
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi again, and welcome to Episode 6 … by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s also a … Canada. I just got back from a conference in Canada on antimicrobial resistance sponsored by the Garner foundation. And …
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Frequently Asked Questions: Project Management
Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA Synthesis projects: Miranda Harmon-Smith Metabolomics projects: Christa Pennacchio   … You … for functional annotation/curation of your genomes Microbial (IMG–ER) Metagenome and Single Cell (IMG/ M-ER) …
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MGM Workshop at Fisabio Summer School
June 24-28: Module 2/Microbial Genomics & Metagenomics Workshop The workshop is addressed to students and professionals of biology, biomedical research, the health sciences …
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Igor Grigoriev
Institute, a Senior Scientist at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of California, Berkeley. He … protists to plants. In 2009, he launched the JGI Fungal Genomics program which resulted in over 2500 fungal genomes …
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