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The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
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Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization
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Protocols
Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA … can be found here . DNA Extraction Protocols: … Tips for High Molecular Weight DNA extraction: … RNA Extraction …
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Webinars on Offerings & Capabilities
… webinars that can help you through the submission process by better understanding the capabilities and resources available for your project. Watch all the webinars here . You can find … … … Shining a Light: Advanced Photon Source Capabilities for FICUS Research shows researchers how to tap into the …
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The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated … from complex environmental samples. The Science A team led by researchers at the Max Planck Institute (MPI) for Marine … in situ hybridization (HCR-FISH). In contrast to standard FISH where a one probe adds one fluorescent …
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Declines in ice cover are accompanied by light limitation responses and community change in freshwater diatoms
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted … group at the JGI, whose team uses a semi-automated, standardized process to carry out the onerous SIP sample … of insights, many studies don’t report the information needed to reuse and compare data. “So we thought, let's go …
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Mission
… of Energy Office of Science user facility supported by the Biological and Environmental Research program, the … and resources. Our vision is to lead genomic innovation for a sustainable bioeconomy. ALL PROPOSALS must support the … and develop the genome-scale engineering technologies needed to design, build, and control plants and microbes to …
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A large sequenced mutant library – valuable reverse genetic resource that covers 98% of sorghum genes
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MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US … to pull that water through the whole plant system, they need to open these pores in their leaves called stomata. And … their water,  and they still get the carbon dioxide they need. Karolina is working to better understand what genetic …
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