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Natural Prodcast Episode 19: Bill Fenical
… … DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill … found out what it was pretty soon. We started testing it in collaboration with the National Cancer Institute. It became …
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Natural Prodcast Episode 2: The Primer, Part 2
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi, again. This is Dan, and you’re listening to the second episode of the Natural Prodcast. This is part 2 of our … suggest you go back and check the first episode out. This one continues the introductory conversation between myself …
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You Can Move, But You Can’t Hide
… and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found … called geNomad identifies and classifies MGEs based upon their gene content and their genetic sequences. The software was created …
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Natural Prodcast Episode 1: The Primer, Part 1
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there, and welcome to the first … My name is Dan Udwary. I – as well as my co-host, Alison Takemura, whose voice you’ll hear in a minute – we work … of Science User Facility located at Lawrence Berkeley National Laboratory. Being a User Facility means that scientists …
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Kjiersten Fagnan
… with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale postdoctoral fellowship at NERSC and LBNL’s Computational Research Division.. As a postdoc, her research focused on stable and …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint … summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each of them has brought invaluable … Lab, as representatives highlighted the benefits of this collaboration.  JGI Director Nigel Mouncey reflected on how …
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Understanding Wildfire Recovery, Starting in Soil
… a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees … the JGI and EMSL was enabled by the Facilities Integrating Collaborations for User Science (FICUS) initiative . In this … analyses were performed under the Facilities Integrating Collaborations for User Science (FICUS) initiative and used …
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JGI Accepts 17 Proposals for Community Science Program
Monitoring Inter-Organism Interactions Within Ecosystems Latest portfolio of approved proposals … products. The work builds off a previous international collaboration that produced the reference genome sequence …
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Tracing the Evolution of Shiitake Mushrooms
… genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  new analysis … Collecting and analyzing these samples was a global collaboration that brought together 39 researchers from …
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Accelerating Metagenomics Discoveries with Deep Learning
On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared … Sevim’s work is part of an ongoing effort to build greater collaboration between JGI and scientists in the …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a … project changed that. This is a multi-year project in collaboration with the JGI to sequence 1000 reference … The JGI sequenced, assembled and annotated these genomes in collaboration with dozens of partners. “This was a …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… … DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus … and money. I mean, we have a huge marine fungal project in collaboration with Bill Fenical at Scripps. So we’re looking …
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