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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation … of microbial genomes that have been sequenced by the JGI though not formally analyzed or published.  The purpose … A primary purpose of this project is to bring educators from a broad range of disciplines …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I … you can always find at naturalprodcast.com or through the JGI website at jgi.doe.gov . There’s a lot more to talk … completed a gene cluster per week. And that really got me excited. And I stopped thinking about doing a postdoc and went …
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Protocols
… Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA … RNA Extraction Protocols: … iTag protocols: …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… DAN: All right. Welcome back to Natural Prodcast. I did it. I’m keeping to my schedule. … you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m really happy … trans in order to cyclize at that small of a ring, which is highly unfavorable. DAN: Oh, I did not know that. That's …
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Plant Microbial Interactions Group
… pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants … by microbial partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and spatial … Plant microbiomes hold the amazing ability to influence plant development, fitness and health. This is …
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … state of things, and what we’re hoping to accomplish at JGI in this area. If this series of podcast episodes has … sparked your interest, and you want to learn more, then I highly recommend David Hopwood’s book called  “Streptomyces …
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Four Researchers Join JGI User Executive Committee
… Four researchers have been elected to the User Executive Committee of the Joint Genome … both as a liaison and advisory body, providing input on JGI policies and practices that support its user community. … Chair.  Aside from the duties described above, the UEC also contributes to proposal review procedures and the …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating … Linking lignin engineering to drought stress resilience: RNA-seq and metabolomic …
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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the information technology company Truss has … download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is currently only … Phytozome , IMG , GOLD , MycoCosm , and PhycoCosm , serve researchers with unique areas of focus and data and …
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Alabama Agricultural & Mechanical University Internship Program
… their scientific skills and collaborating with their mentors and fellow interns. Inspired by the success of the UC Merced internship program, they left the JGI more confident and ready to tackle real-world scientific issues. Our interns say …   Want to see past projects? Read more below         …
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include the … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … How To Create an Annotated GenBank File There are several easy-to-use open source tools for converting DNA sequence files …
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User Advisory Committees
… the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core … stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in this Code of Conduct. … The UEC represents the JGI user community and is responsible for providing input …
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