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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… nearly 10,000 new annotations of fungal mitochondrial genomes — the DNA found inside mitochondria, the … mitochondrial annotations. Summary Mitochondrial genomes carry the genes responsible for oxidative … complex cells. Despite their biological importance, these genomes have resisted large-scale automated annotation due …
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Webinar: PhycoCosm Tutorial
… data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. … are based upon? A: This is still work in progress as new genomes are being added. We do plan to publish the tree or … Q(uestion): Can you please explain again how did you pick genomes to be on the genomes portal? For the taxa I work on, …
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JGI@25: Roots of a Mutualist Relationship
… (INRAE). Today, there are nearly 200 mycorrhizal fungal genomes publicly available on the fungal portal MycoCosm, many sequenced through the JGI 1000 Fungal Genomes Project.       Francis Martin on the main impact of …
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A More Intuitive Phytozome Interface
… website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for over 5 … versions at  https://phytozome-next.jgi.doe.gov/jbrowse/index.html How can I access the genome data that was …
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Webinar: MycoCosm Tutorial
… data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … microbial world but we also annotated several Phytophthora genomes; this depends on the scientific questions asked and … ) on PhycoCosm tree with several sequenced genomes. 2.  Q: How exactly EcoGroups are built? A: …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for … robust methodologies for analyzing and understanding viral genomes and their interactions with microbial hosts. The …
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JGI Scientists Pen Genome Watch Articles
… move toward characterizing the human microbiome  by its genomes and metagenome , rather than just by 16S ribosomal …
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New and Improved: Eucalyptus Reference is Now Accessible
… eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant advances compared to … E. grandis TAG0014 HAP1 and HAP2 genomes (2025 assemblies) …
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Industry Engagement Program
… Science Program, the JGI sequenced and characterized 270 genomes of the Clostridium genus for LanzaTech, information …
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JGI@25: From Life at the Extremes to Editing Genomes
… is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron … and metabolism through reconstruction of microbial genomes from the environment . Nature. 2004. 428, 37–43 …
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Calculating the Costs of Multiple Switchgrass Gene Copies
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Better Genome Editing for Bioenergy
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