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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: A genome and transcriptome approach
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Nigel Mouncey
Genome Institute in 2017 as the fourth Director in its 27-year history. He has a wealth of managerial experience from … Nucleic Acids Res. 48: D422-D430 Wang G et al. 2019. CRAGE enables rapid activation of biosynthetic gene … for Industrial Microbiology and Biotechnology (2021) 2016 World Bio Markets Bio-based Business Person of the Year …
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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Scaling Up Existing Skill Sets
… to functional genomics. Hear from five of the Summer 2019 interns, who briefly shared their experiences below. Name: Noelle Anderson Class Year: At the time of the internship, 4th year PhD student in Quantitative and Systems Biology Mentor: …
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JGI@25: Studying Sorghum’s Survival Skills
… photosynthesize and thrive — some varieties grow their leafy stalks 16 to 18 feet into the air. Beyond being a staple … team studied sorghum plants in drought conditions for three years (2016-2018) in the field in Parlier, California at the … including traits useful for adapting to harsh conditions. 2019: JGI and collaborators analyze the sweet sorghum RIO …
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Trent Northen
Sciences. 2021 May 4;118(18). https://doi.org/10.1073/pnas.2019855118 McGivern BB et al. Decrypting bacterial … through standardized fabricated ecosystems. Nature Methods (16), 567–571 (2019) doi: 10.1038/s41592-019-0465-0. … of Science (AAAS), 2022&2023 Biosciences Inventor of the Year 2019 R&D100 Award 2016 Berkeley Lab Director …
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JGI Scientists Pen Genome Watch Articles
… writing for the Nature Reviews Microbiology column last year — and there’s more to come in 2020. Researchers at the … pathogen biology. Du Toit invited JGI to write half of the 2019 Genome Watch articles as a way to expose readers to a … by its genomes and metagenome , rather than just by 16S ribosomal RNA gene censuses.  Emiley Eloe-Fadrosh ,  …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing … is organizing nearly a dozen hackathons around the world in 2019, only the JGI hackathon is particularly focused on … code to a new architecture. Proposals are due March 1, 2019 for the JGI hackathon, set for May 6-10, 2019, in …
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2024 Progress Report
… and resources.     Director's Perspective Over the last year, the U.S. Department of Energy Joint Genome Institute … who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized … with large-scale advanced genomic capabilities. This year we brought online the latest short-read technology, the …
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Natural Prodcast Episode 2: The Primer, Part 2
We are still in – not an early stage. I think we can identify most secondary metabolism pathways now, but there’s still … it’s been a little bit difficult sometimes to identify secondary metabolism, just because it is similar to … And so we’ve really only come into good science for identifying secondary metabolism as we’ve sequenced more and more …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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