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The genomic standards consortium: bringing standards to life for microbial ecology
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2025 NeLLi Symposium
Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the … Symposium delves into the most recent expansions of the Tree of Life and latest discoveries toward the evolution of cellular complexity and microbial symbiosis.  This is a continuation of the previous …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… metabolites for multiple applications The planet’s microbial diversity is immense, yet much of it remains … has helped to define the current shape of the microbial tree of life by filling in genomic information for thousands … type-strain deposits. All of these genome sequences and the tools to compare them are available on the JGI’s Integrated …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But … But some viruses are also able to play a long game. In a lifestyle called lysogeny, they can insinuate themselves …
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Frederik Schulz
Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the discovery of … user community and supports various user projects in the Microbial Program. In an LDRD-funded project, Dr. Schulz … et al. (2017) Towards a balanced view of the bacterial tree of life. Microbiome. 5 (1), 1-6 Google Scholar … Senior …
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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … also processed using the JGI-developed software suite, BBTools , and relying on the JGI Integrated Microbial Genomes …
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Frequently Asked Questions: Project Management
Christa Pennacchio   … You can visit the Products & Offerings section of our website for more details, including … proposals, sample and project metadata, and to access JGI tools and systems. … Go to the “ edit contacts ” page in … for functional annotation/curation of your genomes Microbial (IMG–ER) Metagenome and Single Cell (IMG/ M-ER) …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a … and offered a way for researchers to study the planet’s microbial diversity, much of which remains unknown and … to nearly 30 major previously uncharted branches of the tree of life. Used in tandem over the years, metagenomics …
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Project Management Office
The JGI Project Management Office carries out a number of activities to facilitate world-class science. PMO works … Tijana Glavina del Rio Metagenomics         Danielle Graham Microbial Program Nancy Hammon Workflow Planning Manager …
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Microbial life under ice: Metagenome diversity and in situ activity of Verrucomicrobia in seasonally ice‐covered Lakes
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The Switchgrass Genome: Tools and Strategies
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