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Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
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Kjiersten Fagnan
… Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics … and the ASCR Future Computing Methodologies workshops. In 2018, Dr. Fagnan was part of the Gordon Bell prizewinning … Coach – Girls who code, Technovation Gordon Bell Prize, 2018 NERSC, CRD Petascale Postdoctoral Fellow …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science … they compared samples collected from an aquifer in 2012 and 2018 against a biofilm sample collected in 2018. They looked for and found CRISPR spacer sequences in …
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Igor Grigoriev
… of California, Berkeley. He contributed to the Human Genome Project and led annotation and analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the … in over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he launched scale-up of algal geomics and PhycoCosm …
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Soil pH influences the structure of virus communities at local and global scales
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Carbon-negative production of acetone and isopropanol by gas fermentation at industrial pilot scale
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Increasing the Scale of the Mass Spectrometry Query Language Compendium with Explainable AI
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User Support Analysis Group
… for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work …
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would complement these … The Open Green Genomes Initiative is the product of a 2018 Community Science Program proposal from James …
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Genome assembly and annotation of microalga Nannochloropsis oceanica C018.
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to … leaves, a team of researchers sequenced  P. trifoliata ’s genome. Scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Improving the Cacao Genome and Phytozome
… Organization (ICCO), global cocoa bean production in 2017-2018  was 4.6 million metric tons . The global chocolate … will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao … released by a Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled …
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