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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… and Environmental Change (SPRUCE) project Melanie LeGro (2016 graduate intern): Currently serves as the graduate … the advancement of women in STEM. Lisette Manriquez (2016 undergraduate intern): Applying to UCSF’s graduate … genomics internship with Igor Grigoriev. Portia Mira (2016 graduate intern): Just started postdoc at UCLA and also …
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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his postdoctoral … by anaerobic fungi.  Nature Microbiol. 8(4):596-610. Nelson et al (2022) Wildfire-dependent changes in soil … cylindrus.   Nature. 541(7638):536-540. Riley et al (2016) Comparative genomics of biotechnologically important …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying … X., Nocek, B., Li, S.N., Savchenko, A., and Eltis, L.D. (2016) The activity of CouR, a MarR family transcriptional …
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The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
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Emiley Eloe-Fadrosh
… training in human microbiome research at the Institute for Genome Sciences at the University of Maryland School of … Nature Biotechnol. 35, 725-731. Paez-Espino D, et al. 2016. Uncovering Earth’s virome. Nature 536 , 425-430. … NIH Training Program in Marine Biotechnology, 2005, 2006 Belkin Memorial Research Scholarship, UCSD …
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Kjiersten Fagnan
JGI workloads. Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and … Networking, Storage and Analysis, 2018, pp. 717-730, doi: 10.1109/SC.2018.00060. Wood-Charlson, E.M., Anubhav, Auberry, D. …
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Rewiring metabolism of Clostridium thermocellum for consolidated bioprocessing of lignocellulosic biomass poplar to produce short-chain esters
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Multiplex Editing of the Nucleoredoxin1 Tandem Array in Poplar: From Small Indels to Translocations and Complex Inversions
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Partnerships: Myco-Ed
… genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect … Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ … solution for production of high-quality fungal reference genomes, this program is an important initiative that …
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Ian Blaby
Dr. Blaby heads the DNA synthesis platform at the Joint Genome Institute, where he leads three groups focused on HTP … energy. Plant biotechnology journal . 14: 1, 22-28. 2016 Blaby et. al., Genome‐wide analysis on Chlamydomonas … cell and metabolic differentiation. The Plant Cell . 27: 10, 2743-2769. 2015 Blaby et. al., The Chlamydomonas genome …
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Common bacterial responses in six ecosystems exposed to 10 years of elevated atmospheric carbon dioxide
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I-Min (Amy) Chen
… data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in 2006, she was Director of Application Development Systems at … et al. IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, …
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