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… to the Human Genome Project and led annotation and analysis of diverse eukaryotic genomes, from protists to … development reveals conserved genes behind complex multicellularity in fungi. Proc Natl Acad Sci U S A. … 2012;336: 1715-1719. Berka RM et al. Comparative genomic analysis of the thermophilic biomass-degrading fungi  …

… upwards of 250 plant genomes and has been under active development for over 5 years, provides users with the genome … building high performance user interfaces and backend data systems. Trying to maintain v12’s codebase and legacy data … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

… DOE Quarterly Metrics Q1 – Report on new computational developments for improving microbial, metagenomic, or plant … 8734 2005 28 33.63 8400 8760 * Reflects actual data due to analysis beyond fiscal year-end close. …

… tackle when it comes to breaking down a plant for energy: Cellulose, hemicellulose and lignin, cumulatively called … lignocellulose, are the primary components of hardy cell walls. It’s the cellulose and hemicellulose that eventually … fungi (Neocallimastix californiae) on sorghum, switchgrass and poplar, then monitored changes to the plants’ …

… through a common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data Portal reflects a … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

… about how microbes have adapted to thrive in polar ecosystems. The work by Cavicchioli’s team sheds light on the … growth because they had larger genome sizes and their cells were not observed to associate with host cells. In the  Proceedings of the National Academy of …

… but it also requires a deep understanding of biological systems. The JGI strategic plan lays out how users and the … insights into a vast range of organisms and ecosystems. These kinds of data could open opportunities along … scientific investigations of biological and environmental systems.”  The user facility’s new plan goes beyond …

… , JGI’s User Programs deputy and head of the Microbial Systems group through the  DOE Office of Science Graduate … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

… with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses … including over 28,000 unique MCP sequences.  Further analysis led to the identification of 328 “high quality” … 12-39. “Overall,” the team concluded, “we provide a global analysis of the diversity, distribution, and evolution of …

… when these records will be made available again within NCBI systems. In addition, the JGI issued a Request for … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …