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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… contributed to a number of projects, from refining lab protocols at the bench to applying artificial intelligence to … and technical writing while also making new connections with both researchers and other interns. At the end of the … she added, ”I’ve developed efficient skills in working with high performance computing and had an amazing …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … This shows that archaea may use CRISPR systems to protect against other, parasitic archaea. However, when  Ca . …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… in 1990 when the U.S. Department of Energy (DOE) partnered with the National Institutes of Health. The DOE works with the National Nuclear Security Administration to … Han, C., Gordon, L. et al. The sequence and analysis of duplication-rich human chromosome 16 . Nature. 432, 988–994 …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… to examine microbial chemical production. The Science Soil bacteria in the genus Streptomyces are nature's chemical … silent under standard laboratory conditions. Researchers with the Department of Energy (DOE) Joint Genome Institute … a drastic metabolic shift. The net effect is coordinated upregulation of energy production, biosynthetic precursor …
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Viruses Reprogram Cells into Different Virocells
… outcomes of these infections can affect the interactions within their ecosystems. Summary Microbes drive the energy … part of efforts to characterize global microbial diversity with an aim to improve predictive ecosystems models, … For this project, RNA sequencing was done by the JGI, and proteomics and metabolomics analysis and microscopy at EMSL. …
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Silver age of GOLD introduces new features
… the appropriate contextual information, or metadata, stored with them. GOLD provides manually curated metadata resources … by applying community-developed standards. GOLD also supports a broad range of activities from proposal intake to … all entities in the system. The JGI’s  Genomic Standards Group, which manages GOLD, communicates personally with …
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First Monoploid Reference Sequence of Sugarcane
… species, sequencing programs generally focus on a genotype with two identical sets of chromosomes to produce a … sorghum and maize, sugarcane can grow on nutrient-poorer soils and does not need to be planted annually. The modern … The final sugarcane sequence generated is 382 Mb; 25,316 protein-coding gene models were predicted with more than 80 …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and … in both genome content and structure following a genome duplication event that occured some 60 million years ago. … of ferns alive today. Boasting adaptations in order to protect themselves from environmental stresses, ferns’ …
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Hiroshi Otani
… Characterization of p-hydroxycinnamate catabolism in a soil Actinobacterium. J. Bacteriol. 196, 4293-4303. Otani, …
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Eelgrass Proves to Be Much Younger Than We Thought
… that figure is likely closer to a mere 250,000 years — with many key colonization events in the Atlantic ocean … one of the largest carbon sinks in the ocean — occupying just 0.2% of the ocean floor, these meadows are … in various locations.  One group investigated changes in protein sequences, while others analyzed single point …
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Four Researchers Join JGI User Executive Committee
… body, providing input on JGI policies and practices that support its user community. The breadth of scientific … the UEC reflects the diverse research topics that the JGI supports that advance DOE Office of Science Biological and … He studies fungal biodiversity, ecology, and evolution, with a focus on microbiome sciences and fungal symbioses. He …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the … T., Lovell, J. T.., et al. 2023. JGI plant gene atlas: an updateable transcriptome resource to improve functional gene …
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