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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the … with light availability. A long-running time-series study offers a first glimpse into a full season’s cycle of this polar environment. This cycle suggests a reliance on … (project 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open … available for research over 100,000 samples and specimens of over 60 different types of NEON samples and specimens per … Q:  Does NEON have or plan on collecting RNA samples from soil or surfaces for microbe-focused collections? A: Not at …
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A Plantiful Future: Xiaohan Yang
… Laboratory, believes they can. And, what’s more, that using gene editing technology to conscientiously mix traits of different plant species will help us get there. …
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Dan Rokhsar
… directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of the Human Genome Project, Professor Dr. Rokhsar ’s team has continued to develop … Publications … Selected Publications …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … novel technique to access high-quality genomic information using minute quantities of DNA derived from individual …
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Georg Rath
… Before joining the JGI, he has been working on the boundary of life science and computational science with notable stops at NERSC, IMBA (Institute of Molecular Biotechnology, Vienna) and the High Field MRI … of the Cluster Advisory Group (CAG), he sees his role as using the substrate provided by LBNL, where possible, and …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … Her lab has sequenced four additional green algal genomes using Chlamy as a reference for functional annotation, …
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New and Improved: Eucalyptus Reference is Now Accessible
… a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with … both haplotypes, meaning it separately represents the sets of chromosomes inherited from each parent. It also has … to provide an improved eucalyptus genome assembly generated using advanced technologies to reconstruct the complete …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding of the … abundant in the drier parts of Australia with lower quality soils and even in the desert areas with poor rainfall. That … are desirable from a biofuels production perspective. By using genomic database alignment tools, researchers searched …
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … of the largest data repositories of its kind, with an interactive browser that allows algal scientists and enthusiasts … researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for microbial and metagenome …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students coming to the DOE Joint … experience funded by a DOE training grant.  Building off the previous year’s project, undergraduate interns … lab. We've been focused on analyzing plant microbiome data using different programming languages such as Python, Bash, …
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Building Sphagnum Genomic Resources
… Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system … and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high latitudes, sphagnum can also act as a … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office …
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