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Tracking the Origins of Methane-Producing Microbes
… methanogenic archaea use one of three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or … the microbes into small pools of cells that were then sequenced separately. From these samples, 111 … to these challenges.  DOE’s Office of Science is the largest supporter of basic research in the physical sciences …
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Gut Fungi: Unexpected Source of Novel Chemicals
Swift — verified that the fungi expressed biosynthetic gene clusters, which are “building blocks” of natural … the compounds. Although what compounds they make is still largely a mystery, anaerobic fungi clearly have unexpected chemical potential. … This research project was supported by a grant from Santa Barbara Cottage …
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JGI on the 2020 Highly Cited Researchers List
Jeremy Schmutz Susannah Tringe Tanja Woyke Below are a few projects each of these researchers were involved in, … Biotechnology.  The work also led researchers to identify a gene related to seed dispersal in wild populations for the … classify 101 representative genomes of Dothideomycetes, the largest class of fungi, by lifestyles. Additionally, as part …
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Learning to Look
As their small genomes can be easily manipulated through genetic engineering, inoviruses are used for several … Roux. “The machine learning approach allows you to quickly scale up once you’ve found the right features that you can … to these challenges.  DOE’s Office of Science is the largest supporter of basic research in the physical sciences …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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From Competition to Cooperation
With so many fungal  genomes , the team conducted a large-scale comparison, charting several changes caused by … to white rot fungi. Additionally, some of the saprotrophic genes found in the mycorrhizal species, such as nutrient … of plant-host and mycorrhizal-fungal interactions. … The project was funded by the U.S. Department of Energy Joint …
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Genetic Transfer in Action: Uncovering DNA Flow in an Extremophilic Microbial Community
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Massie S. Ballon
… social media manager for the JGI. She produced both text-based and multimedia stories that were then shared along … UC Managing Implicit Bias Certification 2020-present, Project Management Professional (PMP) Credential Graduate …
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Refining the Process of Identifying Algae Biotechnology Candidates
… and multi-omics datasets for algae that can be used for large-scale production of biofuels and bioproducts. At NREL, Luke … stresses, and its transcriptome to learn more about which genes expression patterns. The analysis led to the …
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Fishing for Novel Cellulose Degraders
… pools, followed by whole genome amplification and shotgun sequencing. The team first tested the approach on bacterial … by protein in vitro expression and mass spectrometry-based enzyme activity assay. The work was  reported in  The ISME Journal . While the screen caught several microbes from known …
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The Busy World of Deep Sea Eruptions
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Access to Rock Star Scientists
… about their work. It’s fun to be around people who are generous with their time and like nerding out about the big … by passionate scientists working on interdisciplinary projects. I feel inspired to pursue a career in STEM. … helpfulness and patience of my JGI PIs, having lots of data to play around with.” …
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