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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The … lifestyle. The Impact The analysis enables researchers to understand how plants and fungi developed symbiotic … role in soil carbon storage. Summary There are three types of fungal saprotrophs in the forest. White rot can break …
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Better Genome Editing for Bioenergy
… A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in … tool will make the right cut, researchers created a set of guide RNAs that were effective against 94 percent of the genes in a lipid-prolific yeast. The Impact The team … MB) and NSF  1706545 (IW). HA and JW were supported by the Office of Naval Research under grant  N00014-15-1-2785 . JW …
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Team Science Reveals Important Protein in Poplar
… Described as the “DOE Tree,” poplar is considered one of the  Flagship Plants for the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … resistant to disease compared to the controls.  Analyses to understand how the protein influences poplar responses to …
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Boosting Small Molecule Production in Super “Soup”
… Yeast strains engineered for the biochemical conversion of glucose to value-added products are limited in chemical … and get the other’ – but, that was not a known fact in the field whatsoever.” Focusing on Carbon Flux and Future … can be enabled by this technology, but also what we can understand through this technology.” “This is a fantastic …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Biotechnology! Loretta Spencer served as a manyterm mayor of Huntsville, Alabama and is known for her contributions to … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … As well as the seminal Human Genome Project DOE Chromosome publications: The DNA sequence and biology of human …
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The fungus that made itself at home
… rot fungi reveals the genomic changes Serpula lacrymans has undergone in adapting to manmade environments. The Impact … plant mass for conversion to sustainable, alternative biofuels and bioproducts. This study lends insights on how the … 5, 2018 in The ISME Journal , a team led by University of Oslo scientists and including researchers at the Joint …
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Computationally Classifying Fungal Lifestyles
… genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that “taught” … a computer how to classify 101 representative genomes of Dothideomycetes, the largest class of fungi, by … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. The … need to select and breed cultivars for the next generation. Understanding the mechanisms by which they reproduce can … This work was supported by the NSF Dimensions of Biodiversity Program (DEB-1542509 to S.D., DEB-1542486 to LBS, …
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IMG Webinar Series
… Find a series of webinars related to our Integrated Microbial Genomics & Microbiomes portal. …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … mini genomes to match. As a result, they cannot process all of the chemicals they need to survive. To fill in their … onto a larger host — often, a fellow archaeal microbe. Understanding how these hosts and hitchhikers coexist is key …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … genome is cited in roughly 10% of all since-released publications on green algae. “The Chlamy genome launched …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … Parkinson from Purdue University. She’s in the Department of Chemistry and the Department of Medicinal Chemistry and … Purdue campus itself and been able to actually have several undergrads from the lab go out and get soil from different …
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