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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look like … cotton genome ( G. raimondii ) several years ago. Studying the cotton genomes provides breeders with insights … important cattle feed crop,” noted David Stelly, another study co-author at Texas A&M University. “This report …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, particularly … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University … Characterization of p-hydroxycinnamate catabolism in a soil Actinobacterium. J. Bacteriol. 196, 4293-4303. Otani, …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 Annual Meeting . The … great impact on these algal blooms. So Vardi and his group study one specific alga,  Emiliania huxleyi  (sequenced by … Where are they, what are they doing, and what traits are expressed based on their movement? Through the recombination …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems … who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We … advanced genomic capabilities. This year we brought online the latest short-read technology, the Illumina NovaSeq X …
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DAP-seq Drives Robust Mapping of Gene Regulation
… view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex … — and integrated these data with single-cell gene expression maps. Together, the scale of data enabled by these … hard to make them work for the kinds of plant samples we study — and even go beyond, putting four different species …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … outline the questions they asked – and answered – in the study that recently appeared in the Proceedings of the … ecological and evolutionary consequences. A previous study conducted by our research team surveying the genomic …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant … Sonia Vargas and mentors Tomas Tyml and Frederik Schulz, Eukaryotes in Extreme Environments Theo Loreaux and mentors …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using surprisingly few enzymes. The … maize. By deciphering the zealexin synthesis pathway, this study makes it possible to harness the protective function … in the ability make zealexins, and harnessed gene expression data from these lines to identify genes associated …
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2025 NeLLi Symposium
… fees: Regular attendees  (LBNL and external): $400  Industry: $450  Students and postdocs (including LBNL students and postdocs): $250      Hosted by the DOE … will be held on November 4 at the National Atomic Testing Museum at the Desert Research Institute. Metagenomic and …
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Yasuo Yoshikuni
… has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of DNA synthesis, strain engineering, and biosystems design for DOE-mission-relevant … to learn more about the program's areas of focus, major initiatives and more.  …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from … the family tree for Lentinula. Within those samples, this study also tracks the enzymes these fungi use to break down … the GENOBIOREF (BIO2017-86559-R) project of the Spanish Ministry of Science and Innovation (cofinanced by FEDER …
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