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Diversity of Sordariales Fungi: Identification of Seven New Species of Naviculisporaceae Through Morphological Analyses and Genome Sequencing
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and impactful …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome … and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled capabilities for science.  Dr. … in bacteria. Proceedings of the National Academy of Sciences of the United States of America 109(3), 805–810 …
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Supercharging SIP in the Fungal Hyphosphere
… helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a … and the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … HT-SIP is a capability available to request through  the JGI proposal calls . …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the area in summer 2016.  She described the … a strong role in my career interests post-Ph.D. in the sciences. “ Ul-Hasan was one of two UC Merced graduate …
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Tina Clarke
… (JBEI) and in 2017 joined the Joint Genome Institute (JGI). Tina serves in an HR advisory role to Division/Area … State University. Early on, Ms. Clarke knew the importance of understanding human and group behaviors as her role in HR … is very enthusiastic to be a part of the Berkeley Lab’s first Conflict Resolution Services Program and supporting a …
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Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
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Analysis of the Neurotoxin Complex Genes in Clostridium botulinum A1-A4 and B1 Strains: BoNT/A3, /Ba4 and /B1 Clusters Are Located within Plasmids
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration
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Joe Ecker
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral … binding sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in Molecular Biology, …
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Rex Malmstrom
… Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth rates and carbon … Ph.D. in Marine Biology/Biochemistry, University of Delaware BA in Biology, Boston University ( magna cum …
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